Here you can find links to repositories containing code, 3D CAD files from our publications.
Hoyer J, Kolar K, Athira A, van den Burgh M, Dondorp D, Liang Z, Chatzigeorgiou M.
Polymodal sensory perception drives settlement and metamorphosis of Ciona larvae Current Biology
Here we provide the links to the Zenodo repos containing data related to our paper:
Confocal stacks of Cii_PC2_hM4D(Gi)_mCherry transgenic Ciona Larvae
Confocal stacks of Cii_beta gamma crystalin_hM4D(Gi)_mCherry transgenic Ciona Larvae
Whole brain Calcium Imaging dataset (CsCl, 1mM NH4Cl, 100mM NH4Cl, SDS)
Whole brain imaging dataset (ASW, Butanol, Carvacrol)
Athira Athira , Daniel Dondorp , Jerneja Rudolf , Olivia Peytral, Marios Chatzigeorgiou Comprehensive analysis of locomotion dynamics in the protochordate Ciona intestinalis reveals how neuromodulators flexibly shape its behavioral repertoire. PLOS Biology
Here we provide the links to the Zenodo repos containing data related to our paper:
Ciona intestinalis Tierpsy tracked skeletons as of 2022-06-23
Features dataset: Control, drug treatments and light stimuli
Kushal Kolar, Daniel Dondorp, Jordi Cornelis Zwiggelaar, Jørgen Høyer, Marios Chatzigeorgiou “Mesmerize is a dynamically adaptable user-friendly analysis platform for 2D and 3D calcium imaging data.” Nature Communications
Jerneja Rudolf#, Daniel Dondorp#, Louise Canon§, Sonia Tieo§, Marios Chatzigeorgiou “Automated behavioural analysis reveals the basic behavioural repertoire of the urochordate Ciona intestinalis” Sci Rep 9, 2416 (2019)